FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927537

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927537
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429278
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17580.40952483006350193No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17330.4037010981228947No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15200.35408290198892095No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG15030.350122764269308No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14640.34103774244196067No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13620.3172769161242831No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13380.31168613346130014No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11840.2758119447071594No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG11720.273016553375668No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11680.2720847562651708No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10760.25065342272373614No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG9780.2278243935165557No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9320.21710872674583834No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9130.21268269047097685No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8890.20709190780799389No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8870.2066260092527453No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8780.2045294657541267No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8680.2021999729778838No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7350.17121771905385322No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG7280.16958707411048318No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7210.16795642916711317No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7120.16585988566849455No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6890.16050205228313588No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6730.15677486384114722No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6450.1502522840676671No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG6220.14489445068230844No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6210.14466150140468415No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6130.14279790718368982No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6070.14140021151794407No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5960.1388377694640769No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5810.13534353029971255No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5630.13115044330247533No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5570.1297527476367296No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5550.129286849081481No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5460.12719030558286237No Hit
GGCCGGCTTTTTCGGTGGCTGAACTGGCGGTTTCGGAGCACCCG5050.1176393852002665No Hit
ACCGCCCAGAGAATCAGCGATCAGATGGGAACGGTCGAACAGGT5050.1176393852002665No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4990.11624168953452076No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4940.11507694314639931No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4770.11111680542678637No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG4750.1106509068715378No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4740.1104179575939135No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG4730.1101850083162892No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG4650.10832141409529489No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4620.10762256626242202No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG4480.10436127637568197No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4380.10203178359943907No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4360.10156588504419048No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)