FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499284
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23360.46786998982543004No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20670.4139928377436489No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19220.38495125019027243No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14070.28180354267310787No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13270.2657805978160726No Hit
ATGTCCAACATGGACATCGATGGTATTAACA13040.261174001169675No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12490.2501582265804632No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12320.24675335079834324No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11240.2251223752413456No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10330.206896275466468No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8790.17605210661667509No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8300.16623805289174096No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8140.1630334639203339No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8140.1630334639203339No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8060.1614311694346304No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8030.16083030900249157No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7480.14981453441327983No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6500.1301864269634116No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6340.12698183799200455No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6330.1267815511812916No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5820.11656692383493163No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5740.11496462934922809No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5600.11216061399924693No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5570.1115597535671081No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5540.11095889313496927No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)