FastQCFastQC Report
Wed 31 May 2023
EGAF00007927544

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927544
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475908
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41150.864662918042983No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22640.4757221984080957No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19770.4154164250233239No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18130.3809559830891685No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13470.28303789808114177No Hit
ATGTCCAACATGGACATCGATGGTATTAACA12330.259083688443985No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12320.258873563798045No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11650.24479521252006692No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11520.24206359212284728No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11180.23491935416088827No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9520.20003866293485298No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8110.17041108785731696No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7890.1657883456466376No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7480.15717323516309875No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6830.1435151331770006No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6780.14246450994730073No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6660.1399430141960211No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6590.13847214167444127No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6110.12838615866932265No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5830.12250266858300345No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5730.12040142212360373No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5700.1197710481857838No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5060.10632307084562562No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4790.1006497054052464No Hit

[OK]Adapter Content

Adapter graph