FastQCFastQC Report
Wed 31 May 2023
EGAF00007927552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468276
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA30500.6513252867966755No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22990.4909497817526416No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22780.4864652469910908No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14760.315198728954719No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14180.3028128710418642No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13840.29555219571363894No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13560.28957281603157115No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12930.2761192117469185No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11930.25476428431096193No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11930.25476428431096193No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9560.20415310628774486No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9540.2037260077390257No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8740.18664206579026044No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8600.1836523759492265No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8490.1813033339312713No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8130.17361556005432693No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8120.17340201077996736No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7240.15460967463632558No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6980.14905739350297686No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6840.14606770366194297No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6260.13368184574908815No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6130.1309057051824138No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6030.12877021243881814No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5770.12321793130546943No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5760.12300438203110986No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5710.12193663565931202No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5550.11851984726955898No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5390.11510305887980593No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5330.11382176323364852No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC5310.1133946646849294No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5170.11040497484389548No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5060.10805593282594025No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4950.10570689080798504No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)