FastQCFastQC Report
Sun 21 May 2023
EGAF00007927554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445494
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39590.8886763907033541No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28010.6287402299469802No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21570.4841816051394631No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20450.45904097473815586No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13400.3007896851584982No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13310.2987694559298217No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13230.2969736966154426No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12980.29136194875800797No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12250.2749756450142987No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10540.2365912896694456No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10250.23008166215482137No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9770.21930710626854683No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9400.21100171943954352No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8720.1957377652673212No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8280.18586108903823623No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8050.18069828100939633No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7650.17171948443750085No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6580.14770120360768046No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6510.14612991420759877No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6190.13894687695008237No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6020.1351308884070268No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5860.13153936977826863No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5300.11896905457761497No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5260.1180711749204254No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5210.11694882534893848No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5170.11605094569174894No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5040.1131328368058829No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5030.11290836689158551No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4840.10864343851993516No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4760.10684767920555607No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4610.10348063049109527No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC4590.1030316906625005No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4550.10213381100531095No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)