FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374067
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32830.8776502605148275No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11490.30716422459078185No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9090.24300459543343841No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8450.22589536099148017No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8010.21413276231263384No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7790.20825146297321068No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5840.1561217642828691No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4650.12430928149235299No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4330.11575466427137385No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4280.11441800533059585No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4230.11308134638981786No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG3920.10479406095699434No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)