FastQCFastQC Report
Wed 31 May 2023
EGAF00007927563

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927563
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395612
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8900.2249678978392971No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7970.20146001637968516No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7790.19691010383911509No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6860.17340222237950315No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6030.1524220701090968No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5670.1433222450279567No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5280.1334641011900549No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4880.12335318443323255No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4810.12158377400078865No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4670.11804495313590083No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4510.1140005864331719No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT4280.10818680929799904No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)