FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395612
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12300.310910690272287No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9450.2388704083799278No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8580.21687916443383923No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8560.21637361859599807No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8360.21131816021758695No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7640.19311851005530672No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6060.15318038886585847No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5830.14736661173068563No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4780.12082545524402698No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4720.11930881773050363No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4690.11855049897374194No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG4410.11147285724396631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)