FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374766
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33410.8914896228579968No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11700.3121948095611662No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8820.23534685643841757No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8280.2209378652279022No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8270.2206710320573371No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8070.2153343686460351No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5550.1480924096636301No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4990.13314975211198454No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4580.12220959211881546No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4430.11820709456033898No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG4280.1142045970018625No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT4090.10913476676112562No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4090.10913476676112562No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)