FastQCFastQC Report
Wed 31 May 2023
EGAF00007927567

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927567
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412044
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11050.26817524342060556No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10710.25992369746920235No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9960.24172175787051867No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6060.1470716719573638No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5980.14513013173350417No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5900.1431885915096446No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5000.12134626399122424No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT4880.11843395365543487No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA4820.11697779848754015No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT4660.11309471803982098No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4500.10921163759210183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)