FastQCFastQC Report
Wed 31 May 2023
EGAF00007927568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412044
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34010.8253972876683073No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25360.6154682509634893No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10520.2553125394375358No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA7010.17012746211569638No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6350.1541097552688548No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6160.14949859723718825No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5880.1427032064536797No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG5830.14148974381376747No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5260.1276562697187679No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4960.12037549387929444No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA4950.12013280135131199No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4810.11673510595955772No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4800.11649241343157526No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4240.10290163186455815No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)