FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439041
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11410.259884612143285No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11320.25783468969868417No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9750.22207493149842497No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6530.14873326181381694No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA6490.14782218517177212No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5680.1293728831703645No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA5080.1157067335396922No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT5050.11502342605815857No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5020.11434011857662496No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4840.11024027368742328No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT4750.10819035124282242No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4500.10249612223004229No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)