FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927570

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927570
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439041
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26660.6072325819228728No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11390.2594290738222626No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7800.17765994519873998No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA7250.1651326413706237No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6970.15875510487630998No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6560.14941656929535055No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG6390.14554449356666005No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5830.13278942057803259No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5830.13278942057803259No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5210.11866773262633787No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5150.11730111766327063No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5140.11707334850275943No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5110.11639004102122581No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4460.10158504558799748No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4420.10067396894595265No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)