FastQCFastQC Report
Sun 21 May 2023
EGAF00007927572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416487
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36180.8686945811033717No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24390.5856125161169496No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10310.24754674215521733No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA6950.16687195518707668No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6460.15510688208755616No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG6290.15102512203262047No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6000.14406211958596546No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5610.1346980818128777No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5590.13421787474759114No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5010.12029186985428116No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4990.11981166278899462No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4470.10732627909154427No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4470.10732627909154427No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4400.10564555436304135No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4320.10372472610189513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)