FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393373
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37460.9522768466569896No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5800.1474427578913652No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5730.14566327633060733No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5670.1441380064213863No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5370.13651165687528122No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4570.1161747247523343No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4550.11566630144926061No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA4210.10702310529700819No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG3960.10066781400858726No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)