FastQCFastQC Report
Sun 21 May 2023
EGAF00007927575

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927575
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences356833
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16080.45063096742733993No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15610.4374595398968144No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13920.3900984494147122No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13030.365156810048398No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12580.3525458687957672No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11830.3315276333747159No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT8330.23344253474314314No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7810.21886989151788092No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7350.20597870712630276No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7010.19645044040209284No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6840.19168630703998787No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC6740.18888387565051437No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5820.1631015068673581No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5620.1574966440884111No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5540.1552546989768323No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5420.1518917813094641No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5380.15077080875367468No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5350.14993007933683264No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5030.1409622988905174No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4970.1392808400568333No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4680.13115378902736013No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG4500.12610941252630783No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4450.12470819683157107No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4370.12246625171999227No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT4040.11321822813472968No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA3990.11181701243999292No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA3840.10761336535578267No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC3750.10509117710525652No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGCAGT3620.10144801629894096No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)