FastQCFastQC Report
Sun 21 May 2023
EGAF00007927578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences377429
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA37740.99992316435674No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34060.9024213825646678No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17400.4610138595603412No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15600.4133227706403058No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14710.3897421766742884No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT10150.268924751410199No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8620.228387325828169No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8570.22706257335816804No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8090.21434494964615863No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG7970.21116554371815627No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7210.19102930617414135No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7080.18758494975213882No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6850.1814910883901343No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6590.1746023755461292No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6500.17221782110012743No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6130.1624146528221202No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6060.1605599993641188No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5900.15632079146011568No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5330.1412186133021045No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5160.13671445490410117No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG4960.13141544502409724No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC4850.1285009895900951No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4810.12744118761409431No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4510.11949267279408843No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4490.11896277180608802No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4340.11498851439608508No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4060.1075699005640796No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG3910.10359564315407667No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA3890.10306574216607627No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG3880.10280079167207608No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT3870.10253584117807586No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)