FastQCFastQC Report
Wed 31 May 2023
EGAF00007927580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396713
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18960.47792736814775416No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12030.3032418902329896No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11780.2969401053154296No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11640.2934111057615959No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11550.2911424631912743No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10150.255852467652938No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8810.22207490049481615No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8400.21173997323001764No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8400.21173997323001764No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7710.19434704685755194No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7690.19384290406414711No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6320.15930912271591807No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6190.15603219455878684No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC5880.14821798126101238No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5140.1295646979050346No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA4990.1257836269544986No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4700.11847355645012894No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA4580.1154486996897001No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4320.10889484337543766No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4240.10687827220181845No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4150.10460962963149682No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4090.10309720125128241No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)