FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences379048
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35670.9410417677972183No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18640.49175829974040225No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11360.2996981912580992No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11070.29204744517844705No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10700.2822861484561322No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10550.2783288660011397No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9880.26065300436883987No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8680.22899474472889975No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8240.2173867161942551No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7650.2018214052046179No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7430.19601739093729553No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6450.17016314556467782No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC5420.14298980604039593No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5130.13533905996074375No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5070.13375614697874674No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5050.13322850931808108No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4740.12505012557776324No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA4720.12452248791709757No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4030.10631898862413203No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC3910.10315316266013803No Hit

[OK]Adapter Content

Adapter graph