FastQCFastQC Report
Wed 31 May 2023
EGAF00007927584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401570
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38450.957491844510297No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10290.2562442413526907No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8860.2206340115048435No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8650.21540453719152328No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7930.19747491097442538No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5760.1434370097367831No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5020.12500933834698807No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5010.12476031576063948No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4660.11604452523843914No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)