FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences381848
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16840.4410131780184786No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14090.36899499277199305No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9470.2480044415578974No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8070.21134063815968657No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6460.16917726425174415No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4730.12387127862395508No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4280.11208648467453018No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4220.11051517881460686No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)