FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927586

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927586
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences381848
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35980.9422597473340177No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33780.8846451991368293No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9890.2590035825773606No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8560.22417296934906036No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8160.21369759694957158No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5250.13748926274329054No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4420.11575286501435127No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4310.11287213760449183No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4020.10527749261486247No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)