FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences391880
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17190.4386546902112892No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9730.24829029294682045No Hit
GGAGTTGGTGTTGCCGGCAACTACCTCCGGTTTAACTTCCGTCA8590.21919975502704908No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5980.15259773400020415No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4420.11278962947841177No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG3920.10003062161886292No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)