FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927588

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927588
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences391880
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33430.8530672654894356No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17200.43890987036848017No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10020.25569051750535876No Hit
GGTCAGCCGTCTTCCGTACGTGCAGATGTGG8580.21894457486985813No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6450.16459120138818004No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4760.12146575482290496No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4250.10845156680616515No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4100.1046238644483005No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG3960.10105134224762681No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)