FastQCFastQC Report
Wed 31 May 2023
EGAF00007927590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927590
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414515
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18620.4491996670808053No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11310.2728489921956986No Hit
GGTCAGCCGTCTTCCGTACGTGCAGATGTGG9050.21832744291521416No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7170.17297323377923599No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6460.15584478245660593No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4720.11386801442649842No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4500.10856060697441589No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4350.10494192007526869No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)