FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927591

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927591
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392272
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18350.46778765754374513No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10020.2554350042827426No Hit
GGAGTTGGTGTTGCCGGCAACTACCTCCGGTTTAACTTCCGTCA8610.21949055757229677No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5890.15015091569115308No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4380.11165721744095933No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4060.10349961251376597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)