FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392272
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35300.8998857935310193No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18500.47161153485336704No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10080.25696455520659134No Hit
GGTCAGCCGTCTTCCGTACGTGCAGATGTGG8680.2212750336501203No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6450.16442672431374147No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4820.12287392421585022No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4380.11165721744095933No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4040.10298976220581638No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4000.1019700615899172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)