FastQCFastQC Report
Wed 31 May 2023
EGAF00007927593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469740
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19280.41043981777153316No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17640.37552688721420363No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17330.36892749180397666No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC14970.31868693319708774No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14250.30335930514752846No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14050.2991016306893175No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11570.24630646740750203No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11570.24630646740750203No Hit
ACGCAGACCGGTCACCATGCGCAGCTTTGCAGAACGTACGTATT11180.2380040022139907No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10490.22331502533316303No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10340.22012176948950482No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9950.2118193042959935No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9230.19649167624643418No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8330.17733214118448504No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7900.16817814109933155No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7720.1643462340869417No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7640.16264316430365736No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7250.15434069911014606No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6640.14135479201260273No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5840.12432409417975901No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5570.11857623366117427No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5440.11580874526333716No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5380.11453144292587389No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG5320.11325414058841062No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5260.11197683825094733No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5170.11006088474475241No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5140.10942223357602078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)