FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469740
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24790.5277387490952442No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24250.5162430280580746No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22630.48175586494656625No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18220.38787414314301527No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17950.38212628262443055No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16460.3504066079107591No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15590.33188572401754163No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC15220.3240090262698514No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12220.2601439093966875No Hit
ATCAACTCCAACGCCCCGATGGATAAATGCG11310.24077149061182782No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11220.2388555371056329No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11160.23757823476816964No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10090.21479967641674116No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9790.2084131647294248No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8520.1813769319197854No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8030.17094562949716866No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7910.1683910248222421No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7720.1643462340869417No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7120.15157321071230895No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6960.14816707114574018No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6670.14199344318133436No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6080.12943330352961213No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5890.12538851279431174No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5780.12304679184229574No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5570.11857623366117427No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA5500.11708604760080044No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5500.11708604760080044No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5250.11176395452803678No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4750.10111976838250948No Hit
ATCCCTCTGGGCATCGACGTAGGTGGCGGTC4720.10048111721377784No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)