FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927595
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473221
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18710.3953755222190055No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18120.3829077745915756No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17910.37847010170723616No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC15160.32035771869802904No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14470.305776793506628No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14190.2998598963275087No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11430.24153619556190448No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11030.2330834853060198No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10910.23054767222925443No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10730.2267439526141063No Hit
ACGCAGACCGGTCACCATGCGCAGCTTTGCAGAACGTACGTATT10620.22441945729373805No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10110.21364225171748505No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9040.19103125178299357No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8930.1887067564626253No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7730.16334862569497127No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7600.16060149486180875No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7350.15531855095188082No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7030.1485563827471731No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6390.13503204633775762No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6100.12890383140224124No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5870.12404352300510754No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5550.1172813548003998No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5530.11685871928760558No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG5510.11643608377481134No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5470.11559081274922288No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5040.10650414922414686No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4950.10460228941657279No Hit
ACCCAGCGGGATGGCCGGCAGAGAATAGCCATCCGGAAAAACGG4850.10248911185260165No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4800.10143252307061605No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4770.1007985698014247No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)