FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473221
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA24710.5221661760572756No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24630.5204756340060986No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24310.5137134658013909No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18800.39727738202657953No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18740.39600947548819687No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16570.3501535223500225No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15720.33219151305626754No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC15460.32669725138994254No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11650.24618518620264104No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11500.2430154198566843No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10960.23160426101124No Hit
ATCAACTCCAACGCCCCGATGGATAAATGCG10600.22399682178094377No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9960.2104724853715283No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9260.1956802424237301No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9090.19208784056497916No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8550.18067668171953485No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7850.16588443877173667No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7500.15848831729783758No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7430.15700909300305776No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7040.14876770050357022No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7000.14792242947798173No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6130.1295377846714326No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6020.12721328935106432No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5850.12362088749231333No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA5710.12066243890275369No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5510.11643608377481134No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5340.11284368191606035No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5260.11115313986488343No Hit
ATCCCTCTGGGCATCGACGTAGGTGGCGGTC4960.10481360717296993No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4900.10354570063458722No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4750.10037593428863048No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)