FastQCFastQC Report
Wed 31 May 2023
EGAF00007927598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409238
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA14100.3445427843944111No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9840.24044687932205708No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7840.19157556238667964No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG7840.19157556238667964No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7760.18962070970926453No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7500.18326743850766547No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6200.15150108249967012No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5830.14245988886662528No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5190.1268210674473045No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5030.1229113620924743No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5020.12266700550779741No Hit
CATTCTAACGATCAGCACGCGGGTGATCACA4190.10238540897961577No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)