FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences391612
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35930.9174897602729233No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12640.3227684544906693No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9880.252290532465808No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG7570.1933035759884784No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6960.17772693380182425No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6840.17466267632248245No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5790.14785042337824172No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5460.1394237153100518No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5250.13406126472120364No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4880.1246131374932331No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4510.11516501026526255No Hit
CATTCTAACGATCAGCACGCGGGTGATCACA4330.11056862404624987No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)