FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences381381
Sequences flagged as poor quality0
Sequence length44
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT33450.8770756802252866No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG25650.6725557906660269No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG18500.48507922523670555No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17970.47118236094614047No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA17780.4662004662004662No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG15030.39409409488149644No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG14440.37862400067124474No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14350.37626415579171485No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG13810.3621050865145353No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC11530.30232234956644405No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG11360.29786486479399865No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT11320.2968160448475409No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10390.2724309810923984No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT10080.2643026265073509No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT10000.2622049866144354No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9720.25486324698923124No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG9580.2511923771766292No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9240.24227740763173833No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9020.2365088979262208No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8800.23074038822070317No Hit
CATGGAGTCCTGCAGCGGCATCGGCGGAGGCGGGAAGCGGGTTG8260.21658131894352364No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8160.21395926907737933No Hit
GTGCAGGGACAGATCCAGCGGTGCATCTGGGTCCTCGTAACGTG8110.2126482441443071No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8080.2118616291844638No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7490.19639153497421213No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG7350.19272066516161004No Hit
CCACTGCGGCGGCAGATGCGGAGCACGCGGGTCCCAAGGGCCCT7310.1916718452151523No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG7170.1880009754025502No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA6790.17803718591120166No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6530.17121985625922634No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6280.16466473159386547No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6150.1612560667678778No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG6130.16073165679464893No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6090.15968283684819118No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT5950.1560119670355891No Hit
CACCAGCGGAACCAGGGACAGCTGCAGACGCGGAGGACCGGTTT5900.1547009421025169No Hit
CCACTGAGGCGGCAGGTGCGGCGCGCGCGGGTCCCACGGGCCCT5860.15365212215605917No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5650.14814581743715602No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5650.14814581743715602No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5570.14604817754424054No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5550.14552376757101165No Hit
CATAGAGTCCTGCAGCGGCATCGGCGGCGGCGGGAAACGGGTCG5470.1434261276780962No Hit
CCATTGCGGCGGCAGGTGCGGAGCACGCGGATCCCACGGGCCCT5400.14159069277179512No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5370.1408040778119518No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5230.13713320799934975No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC4880.1279560334678445No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4820.1263828035481579No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4810.12612059856154345No Hit
TTTAGACGGAGGGATGTCGGTCGGTGGCATCGGGCCCACGCCAC4800.125858393574929No Hit
GTCAGAGGTGGCGAAGACGGTCGGAGAGCCCACACCGGAACGCA4750.12454736864185682No Hit
GGCGCGCGGTGGGGTCTGCATAGTCGCCGGTGCCCACTGACGCA4550.11930326890956812No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4400.11537019411035158No Hit
CGGACGTACCGGGGCGAATGCCTGACCCGCTGCCTGGGTCAGGC4370.11458357915050828No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG4310.11301034923082166No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4250.11143711931113505No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT4140.10855286445837628No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT4130.10829065947176182No Hit
CGGCGGCAGCGGCATCGGAGGGATGTTGTAGAAAACGGTCGGGG4130.10829065947176182No Hit
CACAGCCGGCGGACCGGTATCAGACGGAGAGACGGTCGGTGGCG4120.1080284544851474No Hit
CGGAGAACCGCCCTGACCCATAACCTGAATCGGCTGCAGGACCG4020.10540640461900305No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA3940.10330876472608756No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG3920.1027843547528587No Hit
CATGCTATCCTGCAGCGGCATCGGTGGCGGAGGGAAACGGGTCG3820.10016230488671433No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)