FastQCFastQC Report
Wed 31 May 2023
EGAF00007927610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences381381
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA34170.895954439261526No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33350.8744536303591421No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG25120.6586589263754619No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18500.48507922523670555No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18300.4798351255044168No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC17520.45938313654849083No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC17320.4541390368162022No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC16820.44102878748548036No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC16510.4329004329004329No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16500.4326382279138185No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC14070.36892241616651067No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC13940.365513751340523No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11490.3012735296199863No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC11350.2976026598073842No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC11130.29183415010186664No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10660.2795105157309882No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10520.27583964591838606No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC10300.2700711362128685No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC10080.2643026265073509No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10010.26246719160104987No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC9710.2546010420026168No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9540.2501435572301714No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9200.24122858768528063No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCAC8510.22313644360888457No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8020.2102883992647772No Hit
TCCTGGGCCCCGAGCGTATGCGCGCTGTCTG7920.20766634939863288No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG7840.2055687095057174No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA7760.2034710696128019No Hit
GGTCTGCAATCTTCCTCTTACCCAGGTTATG7160.18773877041593576No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG6900.18092144076396047No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6720.17620175100490063No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6670.17489072607182843No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6650.17436631609859957No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT6620.17357970113875626No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6510.17069544628599748No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6230.16335370666079327No Hit
GTACACGGCCACACCCAGGGCCCGTGGGACC6000.15732299196866126No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5970.15653637700881795No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC5930.1554875570623602No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5930.1554875570623602No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5560.1457859725576261No Hit
GGTCTGCAGAGCTCTTCTTACCCGGGTTATG5560.1457859725576261No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5550.14552376757101165No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5470.1434261276780962No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5430.14237730773163843No Hit
CCGCACCTGCAGAGCGAAACCGGTCCGCCGC5260.13791982295919303No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5110.13398674815997652No Hit
GGCCTGCAGTCTTCTTCTTATCCGGGTTACG5080.1332001332001332No Hit
CCAATTTTCTATCCGCCGGTACTGCAGCCGA5020.13162690328044657No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4940.1295292633875311No Hit
ACCCCGCTGCCGCCGGTTTCTCCGGGCGATC4740.12428516365524239No Hit
GTTGGCCACGGTGTTACCGTACGTGACGTGC4720.12376075368201352No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4690.12297413872217021No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT4660.1221875237623269No Hit
GGTCACGGTCAGGACCAGGTTAGCCAGTTCC4600.12061429384264032No Hit
GTAGGTCCAACCCCTCACCAGACCCCGCAGG4600.12061429384264032No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA4590.12035208885602586No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4500.11799224397649594No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC4450.11668121904342378No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4370.11458357915050828No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4300.11274814424420725No Hit
GGCCGCCCTTCCCTGAAACTGCAGGCTGCCC4300.11274814424420725No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT4300.11274814424420725No Hit
CAGCCTACTCCGTCCCCGCCGCGCATGCACC4210.11038829936467733No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG4200.1101260943780629No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG3970.10409537968593087No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT3880.10173553480640095No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)