FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927614

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927614
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400095
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36050.9010360039490621No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29450.7360751821442407No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23350.5836113922943301No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14370.3591646983841338No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13140.32842199977505343No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10670.26668666191779455No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7250.18120696334620526No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7050.176208150564241No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6270.15671278071458028No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6250.15621289943638386No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5970.14921456154163387No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5740.14346592684237494No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5650.141216461090491No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5570.1392169359777053No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5220.1304690136092678No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG4970.12422049763181245No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4910.12272085379722317No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA4860.1214711506017321No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4490.11222334695509817No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4490.11222334695509817No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4250.10622477161674101No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4070.10172584011297317No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGG4060.10147589947387496No Hit

[OK]Adapter Content

Adapter graph