FastQCFastQC Report
Sun 21 May 2023
EGAF00007927616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences378169
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33500.8858473328062321No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33230.8787076677358535No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27070.7158175313153643No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22330.5904767445242735No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13520.35751211759821666No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11440.30251025335233717No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9760.2580856706922038No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6260.16553445681692577No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5900.15601490338975432No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5850.15469274319153606No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5320.14067784509042255No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5240.13856238877327334No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5220.13803352469398603No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC4890.12930726738574552No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG4730.1250763547514471No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA4660.12322533047394156No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4650.1229608984342979No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4640.12269646639465423No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4430.11714339356213757No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4300.11370577704677011No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4210.11132588868997724No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGG3980.10524395177817325No Hit

[OK]Adapter Content

Adapter graph