FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400778
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35980.8977538687253293No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28870.7203489213479782No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23720.5918488539790108No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13640.34033804250732325No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12780.3188797788301753No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11350.28319917759956886No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7190.17940106492871366No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7080.17665640329559007No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6230.15544765431236246No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5780.14421949308594784No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5590.13947871390146166No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5580.13922919920754132No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5480.13673405226833807No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5240.13074569961425028No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5110.12750200859328606No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG5060.12625443512368442No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5020.12525637634800313No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4650.1160243326729511No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4500.11228161226414624No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4240.10579423022221779No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4190.10454665675261615No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4160.1037981126708552No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)