FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927620

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927620
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408242
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44531.0907745895816696No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35320.8651731081074461No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14010.34317880080932384No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12240.29982216430450565No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10410.2549958113079987No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8730.21384374954071358No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8160.1998814428696704No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7910.19375762415430065No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6650.16289357782883682No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6510.1594642393482297No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6410.1570147118620818No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5860.14354231068826823No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4840.11855713032955942No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4830.11831217758094463No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4520.11071864237388608No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4450.10900397313358254No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4210.10312510716682752No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)