FastQCFastQC Report
Sun 21 May 2023
EGAF00007927623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430952
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22090.5125860884738904No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG19250.446685477733019No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18680.4334589467040413No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18070.41930423805899497No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG16110.37382353487163306No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG14160.3285748760882883No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11800.2738123967402402No Hit
GCGAGAGGTCGCAGATTTGTACGGGTGCAGGGTATCGGTACGAG11640.27009968627596576No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10920.2533924891867308No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG10220.23714938090553006No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT9900.2297239599769812No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9790.22717147153279252No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9760.22647533832074107No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9670.2243869386845867No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT9470.21974605060424363No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9380.21765765096808926No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9230.214176984907832No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT8970.208143830403386No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT8890.20628747517124876No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8820.2046631643431287No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG8110.18818801165791085No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7560.17542556943696747No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7530.17472943622491602No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT7460.17310512539679593No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7290.16916037052850433No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6900.1601106387718354No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6810.158022239135681No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6330.14688410774285768No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6280.14572388572277192No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6260.1452597969147376No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6240.1447957081067033No Hit
GCCCAGGGTGATCTGCTGGACACGATCAGAGTAACCGCACGCTT6230.14456366370268614No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG6130.14224321966251463No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6080.14108299764242885No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5870.13621006515806866No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5490.12739237780541685No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5220.12112717889695371No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5210.12089513449293657No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5150.11950286806883366No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG4950.1148619799884906No Hit
ACCCAGGGTGATGGAGCGAACACGGTCGCTGTAGCCGCATTCTT4870.11300562475635338No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4820.11184540273626763No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG4730.10975700310011324No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4550.10558020382780448No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG4470.10372384859566727No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG4390.10186749336353004No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4380.10163544895951289No Hit
TTCTTCCAGTGCGCTCAGTTTAGAGTATGGAATGAAATGATAGT4330.10047522693942712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)