FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927626

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927626
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408248
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46541.1399933373831594No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34690.849728596343399No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18590.45536046716701617No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18000.4409084674021673No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17850.4372342301738159No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15550.3808959260057612No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14250.34905253669338243No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12870.31524955419254963No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12100.2963884697536791No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11560.2831612157316141No Hit
ATCGGCTCCCTGGCTGGTGCAATTGGCGGTA10880.26650467362975444No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10860.26601477533264095No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10730.2628304364014031No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9860.24151986047696497No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9820.24054006388273794No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT9810.2402951147341812No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA9320.22829260645489996No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9310.22804765730634322No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG8960.21947443710685663No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT8890.21775979306695928No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8240.2018380984107699No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG7910.19375477650839687No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7810.19130528502282926No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7540.18469165801179674No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7440.18224216652622915No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7330.1795477258921048No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7150.17513864121808312No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7060.1729340988810723No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6680.16362603123591543No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6450.15799220081910995No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6390.1565225059277694No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6010.14721443828261252No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5890.14427504849993142No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5880.14403009935137465No Hit
GACGCCGCGTCTTCTTCTTCCGCGGGTCAGT5850.14329525190570438No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5280.12933315043796909No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5130.1256589132096177No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4970.12173972683270952No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4760.11659579471301758No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4750.11635084556446082No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4540.11120691344476887No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4490.10998216770198507No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4460.1092473202563148No Hit
GATGCAGCTTCCAACTCTGCAAACCGTCAGG4390.10753267621641747No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4270.10459328643373635No Hit
AAAGAGCTGTACGATTCCCCGTCTGCGCAGC4260.10434833728517959No Hit
AACTATATCGACTCCGTTCTGAACGAGGTTC4170.10214379494816875No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)