FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433290
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20830.4807403817304807No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19190.44289044289044294No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG19130.4415056890304415No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18360.42373468116042373No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG16510.38103810381038106No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG14810.3418034111103418No Hit
GCGAGAGGTCGCAGATTTGTACGGGTGCAGGGTATCGGTACGAG12580.2903367259802903No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG12510.2887211798102887No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG11030.25456391793025457No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG10670.24625539477024627No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10470.2416395485702416No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT10020.23125389462023124No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9880.228022802280228No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9850.22733042535022732No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9820.22663804842022664No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT9730.22456091763022457No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9560.22063744836022064No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT9410.21717556371021718No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8740.20171247894020172No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT8670.2000969327702001No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7860.1814027556601814No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7650.17655611715017655No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT7600.1754021556001754No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7530.1737866094301738No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7470.1724018555701724No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7110.1640933324101641No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6570.15163054767015163No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6540.15093817074015092No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG6490.1497842091901498No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6250.14424519375014425No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6110.141014101410141No Hit
GCCCAGGGTGATCTGCTGGACACGATCAGAGTAACCGCACGCTT6040.13939855524013942No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5830.13455191673013456No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5740.13247478594013246No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5730.13224399363013223No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5650.13039765515013038No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5190.11978120889011977No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG5100.1177040781001177No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5030.1160885319301161No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5010.11562694731011562No Hit
ACCCAGGGTGATGGAGCGAACACGGTCGCTGTAGCCGCATTCTT4940.114011401140114No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG4790.11054951649011055No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4560.10524129336010524No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4460.10293337026010294No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG4440.10247178564010248No Hit
TTCTTCCAGTGCGCTCAGTTTAGAGTATGGAATGAAATGATAGT4350.10039465485010039No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4340.10016386254010017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)