FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927630

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927630
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420062
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12760.3037646823564141No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10030.23877427617827846No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9570.22782351176731053No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8430.20068466083578138No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7810.18592493489056378No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7380.1756883507672677No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG7350.17497417047959588No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6420.15283458156176943No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6290.14973980031519157No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6020.14331217772614518No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5970.14212187724669215No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5800.13807485561655183No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG5680.13521813446586456No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5330.12688603110969332No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4790.11403078593160057No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4600.10950764410967906No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA4280.10188972104117965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)