FastQCFastQC Report
Wed 31 May 2023
EGAF00007927632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400873
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35520.8860661606044807No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12010.29959613144312536No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9520.23748169619804776No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9310.23224312937014965No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7320.1826014722867342No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6940.17312216088387095No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG6530.16289448279130797No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6100.1521678935722785No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6080.151668982445812No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6040.15067116019287904No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5430.13545437083565118No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5410.1349554597091847No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG5270.1314630818239193No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4800.11973867035195684No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4490.1120055478917263No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4290.10701643662706142No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4110.10252623648886305No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)