FastQCFastQC Report
Sun 21 May 2023
EGAF00007927633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514565
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT15090.2932574116000894No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13910.2703254205008114No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12590.24467268469483933No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12560.24408966797197632No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9770.18986911274571724No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9200.17879179501132025No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7880.1531390592053482No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7650.14866926433006522No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7080.13759194659566817No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6800.1321504571822802No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT6640.12904103466034417No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5500.10688639919155016No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG5380.10455433230009814No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)