FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927635

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927635
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477848
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT14030.29360800924143243No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13010.27226230935360196No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11900.24903316535802178No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11680.24442919087241133No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8530.17850864710117026No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8520.1782993755336425No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7360.15402387370042356No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7240.15151261489009057No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT6540.1368636051631481No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6480.1356079757579816No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6290.13163181597495438No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5310.11112320235723494No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG5290.11070465922217944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)