FastQCFastQC Report
Sun 21 May 2023
EGAF00007927636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477848
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65491.3705194957392308No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG14060.2942358239440157No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13190.2760291975691015No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13040.27289012405618523No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12780.26744906330046375No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11790.24673117811521653No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10460.2188980596340259No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9490.19859871758383418No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8330.17432321575061527No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7840.16406890894175555No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7310.15297751586278482No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6690.14000267867606436No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6420.13435234635281512No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5370.11237883176240142No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG5110.10693777100667995No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)