FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518412
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT15110.291467018510374No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14010.27024837388023426No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12930.24941552278882434No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12590.24285703263041752No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9340.18016558258682283No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9110.17572895689142998No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7530.14525126733177474No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7520.14505837056240983No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7210.1390785707120977No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT7080.13657091271035393No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6920.13348456440051543No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6090.11747413254322815No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG5580.10763639730561794No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)