FastQCFastQC Report
Wed 31 May 2023
EGAF00007927638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518412
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30550.5892996304097899No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG15370.2964823345138616No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14540.2804719026565743No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13950.2690909932640448No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13910.2683194061865852No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12930.24941552278882434No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11010.21237934307076226No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10650.20543505937362563No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9550.18421641474348588No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8090.1560534864162095No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7620.1469873382560589No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG7320.1412004351751117No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7260.14004305455892224No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5850.11284461007847041No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG5300.10223528776340055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)