FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508161
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT34640.6816737215173931No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG19140.3766522814619776No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16370.3221419983036872No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15590.3067925322879953No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG13600.26763171514539685No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13100.25779231385328666No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA12640.24874006466454526No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12380.243623575992648No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12110.23831029929490852No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10940.21528610027137068No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG10720.2109567637028422No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10220.20111736241073203No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9790.1926554772995173No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG9720.19127796111862186No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9670.19029402098941084No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9510.1871454125759356No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG8990.17691243523214098No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8820.17356703879282354No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8710.1714023705085593No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT8260.16254690934566016No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7930.15605290449286743No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7840.1542818122602876No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7330.1442456229423352No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6960.13696446598617368No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6520.12830579284911672No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6470.1273218527199057No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6300.12397645628058823No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6270.12338609220306164No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6140.12082784786711298No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT6130.12063105984127077No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5960.11728566340195332No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5710.11236596275589823No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5660.11138202262668721No Hit
CTGACGGTTGATTTCATCTTTGGTGCGGACGTTGTCGGCGTGTG5430.10685589803231654No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5430.10685589803231654No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5220.10272334948963026No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5200.10232977343794586No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)